{"id":152,"date":"2020-10-05T03:43:37","date_gmt":"2020-10-05T03:43:37","guid":{"rendered":"https:\/\/sysbiotox-collins.swarthmore.edu\/?page_id=152"},"modified":"2020-11-28T00:05:52","modified_gmt":"2020-11-28T00:05:52","slug":"publications","status":"publish","type":"page","link":"https:\/\/sysbiotox-collins.swarthmore.edu\/?page_id=152","title":{"rendered":"Publications"},"content":{"rendered":"\n

Highlighted Articles<\/h3>\n\n\n\n
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D. Hagstrom, L. Truong, S. Zhang, R. L. Tanguay, and E.-M. S. Collins (2019)<\/strong>
Toxicological Sciences<\/em>
Comparative analysis of zebra\ufb01sh and planarian model systems for developmental neurotoxicity screens using an 87-compound library<\/span><\/a>
This paper was awarded the \u201cTox. Sci. Paper of the year 2019\u201d by the Society of Toxicology.<\/figcaption><\/figure><\/div>\n<\/div>\n\n\n\n
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P.T. Malinowski*, O. Cochet-Escartin*, K.J. Kaj, E. Ronan, A. Groisman, P.H. Diamond, E.-M. S. Collins (2017)<\/strong>
Proc Natl Acad Sci<\/em>
Mechanics dictate where and how freshwater planarians \ufb01ssion<\/span><\/a>
(* \ufb01rst author). Featured in Nature Physics.<\/figcaption><\/figure><\/div>\n<\/div>\n\n\n\n
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J.A. Carter*, C. Hyland*, R.E. Steele, E.-M. S. Collins (2016)<\/strong>
Biophysical Journal<\/em>
The dynamics of mouth opening in Hydra<\/span><\/a>
(* \ufb01rst author). Featured as \u201cNew and Notable\u201d and BPS \u201cPaper of the year 2016\u201d<\/figcaption><\/figure><\/div>\n<\/div>\n<\/div>\n\n\n\n
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The following is a complete list of publications. Undergraduate and student authors are underlined:<\/p>\n\n\n\n

Neurotoxicology and Planarian Behavior<\/span><\/h3>\n\n\n\n
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D. Ireland, V. Bochenek<\/span>, D. Chaiken<\/span>, C. Rabeler, S. Onoe,<\/span> A. Soni, and E.-M. S. Collins (2020), Dugesia japonica is the best suited of three planarian species for high-throughput toxicology screening<\/em>. Chemosphere, PMID: 32298908.<\/p>\n<\/div>\n\n\n\n

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Z. Sabry, A. Ho<\/span>, D. Ireland, C. Rabeler, O. Cochet-Escartin, and E.-M. S. Collins (2019), Pharmacological or genetic targeting of Transient Receptor Potential (TRP) channels can disrupt the planarian escape response<\/em>. Plos ONE, PMID: 31805147.<\/p>\n<\/div>\n\n\n\n

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S. Zhang, D. Ireland, N. Sipes, M. Behl, and E.-M. S. Collins (2019), Screening for neurotoxic potential of 15 \ufb02ame retardants using freshwater planarians<\/em>. Neurotoxicology and Teratology, PMID: 30943442.<\/p>\n<\/div>\n\n\n\n

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D. Hagstrom, L. Truong, S. Zhang, R. L. Tanguay, and E.-M. S. Collins (2019), Comparative analysis of zebra\ufb01sh and planarian model systems for developmental neurotoxicity screens using an 87-compound library<\/em>. Toxicological Sciences, PMID: 30011007.
This paper was awarded the \u201cTox. Sci. Paper of the year 2019\u201d by the Society of Toxicology.<\/p>\n<\/div>\n\n\n\n

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S. Zhang, D. Hagstrom, P. Hayes, A. Graham<\/span>, and E.-M. S. Collins (2019), Multi-behavioral endpoint testing of an 87-chemical compound library in freshwater planarians<\/em>. Toxicological Sciences, PMID: 29893936.<\/p>\n<\/div>\n\n\n\n

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D. Hagstrom, S. Zhang, A. Ho, E.S. Tsai<\/span>, Z. Radic, A. Jahromi, Y. He,<\/span> K.J. Kaj,<\/span> P. Taylor, and E.-M. S. Collins (2018), Planarian cholinesterase: molecular and functional characterization of an evolutionarily ancient enzyme to study organophosphorus pesticide toxicity<\/em>. Archives of Toxicology, PMID: 29167930.<\/p>\n<\/div>\n\n\n\n

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D. Hagstrom, H. Hirokawa, Z. Radic, L. Zhang, P. Taylor, and E.-M. S. Collins (2016),Planarian cholinesterase: in vitro characterization of an evolutionarily ancient enzyme to study organophosphorus pesticide toxicity and reactivation<\/em>. Archives of Toxicology, PMID: 27990564.<\/p>\n<\/div>\n\n\n\n

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O. Cochet-Escartin*, J.A. Carter*, M. Chakraverti-Wuerthwein*, J. Sinha<\/span>, and E.-M. S. Collins (2016), Slo1 regulates ethanol-induced scrunching in freshwater planarians<\/em>. Physical Biology PMID: 27609598.
(* \ufb01rst author)<\/p>\n<\/div>\n\n\n\n

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D. Hagstrom, O. Cochet-Escartin, and E.-M. S. Collins (2016), Planarian brain regeneration as a model system for developmental neurotoxicology<\/em>. Regeneration, DOI 10.1002\/reg2.52.<\/p>\n<\/div>\n\n\n\n

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D. Hagstrom, O. Cochet-Escartin, S. Zhang, C. Khuu, and E.-M. S. Collins (2015), Freshwater Planarians as a New Invertebrate System for Neurotoxicology<\/em>. Toxicological Sciences, PMID: 26116028.<\/p>\n<\/div>\n\n\n\n

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J.A. Talbot, K.W. Currie, B.J. Pearson, and E.-M. S. Collins (2014), Smed-dynA-1 is a nervous system speci\ufb01c dynamin in the planarian Schmidtea mediterranea required for normal locomotion<\/em>. Biology Open, PMID: 24950970.<\/p>\n<\/div>\n\n\n\n

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Biomechanics<\/span><\/h3>\n\n\n\n
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R. Wang, T. Goel, K. Khazoyan, Z. Sabry, H.J. Quan<\/span>, P.H. Diamond and E.-M. S. Collins (2019), Mouth Function Determines The Shape Oscillation Pattern In Regenerating Hydra Tissue Spheres. <\/em>Biophysical Journal, PMID: 31443907.<\/p>\n<\/div>\n\n\n\n

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K. Chiou and E.-M. S. Collins (2018), Review: Why we need mechanics to understand animal regeneration. <\/em>Developmental Biology, PMID: 29179947.<\/p>\n<\/div>\n\n\n\n

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O. Cochet-Escartin, T. Locke, W. Shi,<\/span> R.E. Steele, E.-M. S. Collins (2017), Physical mechanisms driving cell sorting in Hydra. <\/em>Biophysical Journal, PMID: 29262375.
Featured as \u201cNew and Notable\u201d.<\/p>\n<\/div>\n\n\n\n

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P.T. Malinowski*, O. Cochet-Escartin*, K.J. Kaj,<\/span> E. Ronan, A. Groisman, P.H. Diamond, E.-M. S. Collins (2017), Mechanics dictate where and how freshwater planarians \ufb01ssion. <\/em>Proc Natl Acad Sci, PMID: 28973880.
(* \ufb01rst author) Featured in Nature Physics.<\/p>\n<\/div>\n\n\n\n

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J.A. Carter*<\/span>, C. Hyland*, R.E. Steele, E.-M. S. Collins (2016), The dynamics of mouth opening in Hydra. <\/em>Biophysical Journal, PMID: 26958895.
(* \ufb01rst author) Featured as \u201cNew and Notable\u201d and BPS \u201cPaper of the year 2016\u201d.<\/p>\n<\/div>\n\n\n\n

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O. Cochet-Escartin, K. Mickolajczyk, and E.-M. S. Collins (2015), Scrunching: A novel escape gait in planarians. <\/em>Physical Biology, PMID: 26356147.<\/p>\n<\/div>\n\n\n\n

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E.-M. Schotz, M. Lanio<\/span>, J.A. Talbot, and M.L. Manning (2013), Glassy dynamics in threedimensional embryonic tissues. <\/em>Journal of the Royal Society Interface, PMID: 24068179.<\/p>\n<\/div>\n\n\n\n

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M.L. Manning, R.A. Foty, M.S. Steinberg, and E.-M. Schotz (2010), Coaction of intercellular adhesion and cortical tension speci\ufb01es tissue surface tension. <\/em>Proc Natl Acad Sci, PMID: 20616053.<\/p>\n<\/div>\n\n\n\n

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E.-M. Schotz (2008), Dynamics and Mechanics of Zebra\ufb01sh Embryonic Tissues – A study of the physical properties of zebra\ufb01sh germlayer cells and tissues and cell dynamics during early embryogenesis, <\/em>VDM publishing group.<\/p>\n<\/div>\n\n\n\n

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Population Statistics and Evolution<\/span><\/h3>\n\n\n\n
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X. Yang*, K.J. Kaj*<\/span>, D.J. Schwab, and E.-M. S. Collins (2017), Coordination of size-control, reproduction and memory in freshwater planarians. <\/em>Physical Biology, PMID: 28467318.
(* \ufb01rst author)<\/p>\n<\/div>\n\n\n\n

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J.A. Carter, C.H. Lind, M.P. Truong<\/span>, and E.-M. S. Collins (2015), To each his own: Reproductive Strategies and Success of Three Common Planarian Species: Schmidtea mediterranea, Dugesia japonica and Dugesia tigrina. <\/em>J. Stat. Phys., DOi 10.1007\/s10955-015-1310-1.<\/p>\n<\/div>\n\n\n\n

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M.A. Thomas, S. Quinodoz,<\/span> and E.-M. Schotz (2012), Size matters! Birth size and a size independent stochastic term determine asexual reproduction dynamics in freshwater planarians. <\/em>J. Stat. Phys., DOI: 10.1007\/s10955-012-0514-x.<\/p>\n<\/div>\n\n\n\n

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S. Quinodoz, M.A. Thomas,<\/span> J. Dunkel, and E.-M. Schotz (2011), The more the merrier? Entropy and statistics of asexual reproduction in freshwater planarians. <\/em>J. Stat. Phys., DOI: 10.1007\/s10955-011-0157-3.
This article was featured in the Ivy League Week.<\/p>\n<\/div>\n\n\n\n

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J. Dunkel, J.A. Talbot, and E.-M. Schotz (2011), Memory and obesity a\ufb00ect the population dynamics of asexual freshwater planarians. <\/em>Physical Biology, PMID: 21263170.<\/p>\n<\/div>\n\n\n\n

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Developmental Biology<\/span><\/h3>\n\n\n\n
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B.G. Lambrus, O. Cochet-Escartin, P.A. Newmark , E.-M. S. Collins*, and J.J. Collins* (2015), Tryptophan hydroxylase gene function is required for eye melanogenesis in the planarian Schmidtea mediterranea. <\/em>Plos ONE, PMID: 26017970.
(* corresponding author).<\/p>\n<\/div>\n\n\n\n

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E.-M. Schotz, R.D. Burdine, F. Julicher, M.S. Steinberg, C.-P. Heisenberg, and R.A.Foty (2008), Quantitative Di\ufb00erences in Tissue Surface Tension In\ufb02uence Zebra\ufb01sh Germ Layer Positioning. <\/em>HFSP Journal, Vol.2 (1), pp. 1-56.<\/p>\n<\/div>\n\n\n\n

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F. Ulrich*, M. Krieg*, E.-M. Schoetz*, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Mueller, P.-H. Puech, C.-P. Heisenberg. Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E Cadherin, <\/em>Developmental Cell, Vol.9, 555564 (2005).
(* first author)<\/p>\n<\/div>\n\n\n\n

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Methods and Techniques<\/span><\/h3>\n\n\n\n
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R. Wang and E.-M. S. Collins (2020), A novel bilateral grafting technique for studying patterning in Hydra. <\/em>Developmental Biology, PMID: 32165148.<\/p>\n<\/div>\n\n\n\n

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T. Goel, R. Wang, S. Martin, E. Lanphear<\/span>, and E.-M. S. Collins (2019), Linalool acts as a fast and reversible anesthetic in Hydra. <\/em>Plos ONE, PMID: 31648269.<\/p>\n<\/div>\n\n\n\n

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C. Tran, S. Fu, T. Rowe<\/span>, and E.-M. S. Collins (2017), Generation and long-term maintenance of nerve-free Hydra vulgaris, <\/em>J. Vis. Exp.(125), e56115.<\/p>\n<\/div>\n\n\n\n

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J.P. Dexter*, M.B. Tamme*, C.H. Lind*<\/span>, and E.-M. S. Collins (2014). On-chip immobilization of planarians for in vivo imaging. <\/em>Nature Scientific Reports, DOI: 10.1038\/srep06388.<\/p>\n<\/div>\n\n\n\n

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M.A. Thomas<\/span> and E.-M. Schoetz (2011). SAPling: A Scan-Add-Print barcoding database system to label and track asexual organisms. <\/em>Journal of Experimental Biology, PMID: 21993779.<\/p>\n<\/div>\n\n\n\n

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J.A. Talbot and E.-M. Schotz (2011), Quantitative characterization of planarian wildtype behavior as a platform for screening locomotion phenotypes. <\/em>J Experimental Biology, PMID: 21389189.<\/p>\n<\/div>\n\n\n\n

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Outreach and Education<\/span><\/h3>\n\n\n\n
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Vista SSEP Mission 11 Team, <\/span>D. Hagstrom, C. Bartee, and E.-M. S. Collins (2018), Studying Planarian Regeneration Aboard the International Space Station within the Student Space Flight Experimental Program. <\/em>Frontiers in Astronomy and Space Sciences, doi.org\/10.3389\/fspas.2018.00012.<\/p>\n<\/div>\n\n\n\n

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E.-M. S. Collins and T.R. Calhoun (2014), Raising the bar in freshman science education. Journal of College Science Teaching, <\/em>Vol. 43 (4), pp. 26-35.<\/p>\n<\/div>\n\n\n\n

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E.-M. Schoetz, S. Barolo, R.J. Full, O. Gigliotta, F. Grey, E.C. Guinan, J. Lee, A. Lindner, R. B. Lotto, D. Misevic, T. E. Murphy, J. Niemela, Z. Popovic, L. Riboli-Sasco, I. Riedel-Kruse, M.F. Schatz, T. Schaus, M.D. Shattuck, Ke. Showalter, K.O. Stanley, H.L. Swinney, L. Xu, and F. Taddei (2012). Training the next generation of “night scientists” <\/em>(Workshop Summary), ICASE Newsletter_052012.<\/p>\n<\/div>\n\n\n\n

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Highlighted Articles The following is a complete list of publications. Undergraduate and student authors are underlined: Neurotoxicology and Planarian Behavior D. Ireland, V. Bochenek, D. Chaiken, C. Rabeler, S. Onoe, A. Soni, and E.-M. S. Collins (2020), Dugesia japonica is the best suited of three planarian species for high-throughput toxicology screening. Chemosphere, PMID: 32298908. Z. Sabry, A. Ho, D. […]<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"templates\/template-full-width.php","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/pages\/152"}],"collection":[{"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=152"}],"version-history":[{"count":47,"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/pages\/152\/revisions"}],"predecessor-version":[{"id":559,"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=\/wp\/v2\/pages\/152\/revisions\/559"}],"wp:attachment":[{"href":"https:\/\/sysbiotox-collins.swarthmore.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=152"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}